To understand the research project by Michael Wagner and his team, one must be ready to follow the microbiologists into the depths of mouse intestine. Michael Wagner, Professor for Microbial Ecology, provides this analogy: "Much like cows grazing in a meadow, intestinal bacteria can feed on mucus secreted by the mucosal tissue. There are a group of microorganisms that do not nourish themselves from mouse food, but rather are specialized in feeding on the secreted products of their host." The intestinal mucus layer is a vital barrier to block pathogenic microorganisms from entering the body and also plays a major role in inflammatory bowel disease. That is why scientists are very interested to know which bacteria inhabit the mucus layer in healthy organisms and thus may suppress the colonization and degradation of this barrier by pathogens.
Cooperation: Department of Microbial Ecology and Max F. Perutz Laboratories
The team led by Michael Wagner and Alexander Loy wanted to know as part of their activities supported by the Austrian Genome Research Program GEN-AU: Which organisms in healthy mice consider the mucosa and intestinal mucus layer a delicacy? "We've come up with an experimental setup that allows us for the first time to look into the intestine and directly observe organisms grazing on the mucus and measure how much mucus they have taken up," said team leader Alexander Loy from the Department of Microbial Ecology, University of Vienna. To do this, the microbiologists in collaboration with the teams of Thomas Decker, Department of Microbiology, Immunobiology and Genetics at the Max F. Perutz Laboratories and Bärbel Stecher of the University of Munich, labeled an amino acid with stable isotopes that once in the bloodstream mostly ends up in the mucus. Wagner explains, "It became clear from the isotope ratio mass spectrometry measurements made by our collaborators Andreas Richter and Wolfgang Wanek from the Department of Terrestrial Ecosystems Research, University of Vienna, that after only a few hours the isotopes had arrived in the intestinal mucosa, where they were broken down by bacteria." A method was now established to identify bacteria feeding on the mucus layer with single-cell resolution.
Research success through the NanoSIMS-Facility of the University of Vienna
The key tool in the investigation was the high-resolution secondary ion mass spectrometry, or NanoSIMS for short. It is a device that cost more than 2 million euros and since its installation in February 2010 at the Faculty of Life Sciences at the University of Vienna has been in use by the team led by Michael Wagner for applications in microbiology and ecology. "This technology allows us to exactly quantify the amount of stable isotopes taken up by each microbial cell in a gut sample," says Arno Schintlmeister, who operates the unit at the Faculty.
"The investment costs for the NanoSIMS device were high, and it took some time before we were able to integrate this highly complex device completely in our research. Now however, our patience will be rewarded: The University of Vienna has the world's first study in which one does not have to indirectly infer the function of individual intestinal bacteria cells but can measure it directly", said microbiologist Michael Wagner This research approach has great potential and is a topic that will continue to be a research priority in the working groups led by David Berry and Alexander Loy in the coming years.
Gut microbiota is hot research topic
The bacterial cells measured by NanoSIMS facility were identified using fluorescence in situ hybridization - FISH for short - in the confocal laser-scanning microscope. "We have identified a number of mucus-eating microorganisms and clearly the most important players are Akkermansia muciniphilia and Bacteroides acidifaciens," explains Wagner, "The gut microbiota is a very hot research topic worldwide because the composition of our gut microbial communities appears to correlate with many diseases – from obesity and autism to inflammatory bowel disease."
Publication in PNAS
Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M. Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc Natl Acad Sci U S A. 2013 Mar 19.
Faculty of Life Sciences, University of Vienna, Max von Pettenkofer Institute of Hygiene and Medical Microbiology, Ludwig Maximilians University of Munich, Department of Microbiology, Immunobiology and Genetics at the Max F. Perutz Laboratories, University of Vienna and the Medical University of Vienna.
The study was conducted as part of the GEN-AU joint project Inflammobiota: http://gutmicrobiota.univie.ac.at/inflammobiota/