Initially, autophagy was thought to be a survival process of cells when they are starved or stressed. However, autophagy is increasingly understood as a quality control mechanism that ensures the cell’s normal functioning by recycling cellular components that have become unwanted or harmful. With the help of autophagy, the cell replenishes its molecular resources and generates some of the energy needed for responding to changes in the environment.
Autophagy operates through autophagosomes, double-membraned vesicles that engulf the material to be degraded. “Autophagosomes are organelles that are born, mature, and die,” says Yasin Dagdas, Group Leader at GMI and one of the corresponding authors of the study. “We knew quite a bit about how autophagosomes are born, but much less about their maturation path and delivery to their final destination, especially for plant cells.” In plant cells, the “final destination” is the vacuole, a large organelle that occupies around 80% of the cell’s volume and is filled with digestive enzymes.
Many vesicular organelles, like the autophagosomes, are at work in the cell; they move across the cell in a well-orchestrated manner to mature and fulfill their functions. In their latest publication, Dagdas and his team show that plant autophagosomes do not follow a direct, linear path on their way to the vacuole. “We don’t know yet if this is true for all plant autophagosomes, but we show that at least some of them stop at a different location before reaching the vacuole,” says Dagdas.
Using complementary approaches in biochemistry, cellular imaging, and structural biology, the researchers show that plant autophagosomes first fuse with other endosomal organelles called “multivesicular bodies” (MVBs) to form the so-called “amphisomes.” In turn, the amphisomes then fuse with the vacuole.
Central to their findings is the discovery of the autophagy adaptor CFS1, a molecule that recognizes membrane markers on both the autophagosomes and the MVBs and, thus, mediates their fusion. The researchers demonstrate that the amphisomes function as cellular sorting hubs for the maturation of autophagosomes and their trafficking to the vacuole.
“The trafficking pathways are quite complex, but they all need to be coordinated,” says Dagdas. “Generating vesicles is energetically costly for the cell. Hence, we believe that by using the amphisomes as sorting hubs for autophagosomes, the cell optimizes its energetic efficiency.” The scientists compare this sorting hub model to the “hub and spoke” system seen in the aviation industry and other supply chain logistics. “By having all materials transit through centralized hubs, the cell reduces its logistical costs as fewer routes are necessary. In addition, this system allows the cell to be economical, as complicated operations can be performed in the hubs rather than organized separately in each autophagosome,” Dagdas explains.
The researchers confirmed the function of the autophagy adaptor CFS1 in two evolutionarily distant plant model organisms: Arabidopsis thaliana and Marchantia polymorpha, thus suggesting that this mechanism of autophagosome maturation is conserved across plants. Since autophagy plays a central role in the regulation of cell stress, this research could find future applications in engineering plant vesicular trafficking to help increase plant stress tolerance.
The plant autophagy adaptor CFS1 merges with the autophagosome marker ATG8. Co-movement of the newly identified plant autophagy adaptor CFS1 (magenta) with the autophagosome marker ATG8A (green) in Arabidopsis root epidermal cells. ©Dagdas/GMI.
A mutation in the plant autophagy adaptor CFS1 prevents autophagosome fusion with the multivesicular bodies. Autophagosomes expressing a mutant plant autophagy adaptor CFS1 (magenta) cannot fully fuse with multivesicular bodies (MVBs, green). ©Dagdas/GMI.
The work was done in collaboration with the lab of Byung-Ho Kang (co-corresponding author; The Chinese University of Hong Kong, China) and researchers from the Institute of Science and Technology Austria (ISTA); the University of Lyon, CNRS, INRAE, Lyon, France; and the University of Cologne, Germany. The publication was co-first authored by Jierui Zhao, a Ph.D. student and DOC Fellowship holder in the Dagdas lab at GMI; Mai Thu Bui, an I2P intern (International Internship Program) in the Dagdas lab at GMI; and Juncai Ma, a Ph.D. student in Byung-Ho Kang’s lab in Hong Kong.
Zhao, J., Bui, M. T., Ma, J. et al, “Plant autophagosomes mature into amphisomes prior to their delivery to the central vacuole”, Journal of Cell Biology, 2022. DOI: https://doi.org/10.1083/jcb.202203139
The Gregor Mendel Institute of Molecular Plant Biology (GMI) conducts cutting-edge research in molecular plant biology. The institute is owned and funded by the Austrian Academy of Sciences (ÖAW). Research topics include basic mechanisms of epigenetics, cell biology, plant-pathogen interactions, developmental biology, and population genetics. GMI is located at the Vienna BioCenter, one of the leading life science sites in Europe.